更新依赖

.github/workflows/debugger-action.yml

@@ -0,0 +1,25 @@
+# 基于frp 远程 ssh 登录 github action 的 Runner 主机进行调试
+# ssh root@frp_server_addr -p 29002     root/root
+# kubectl get node 查看节点
+name: kind
+on:
+  push:
+    branches: [ master ]
+
+jobs:
+  hello:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Creating kind cluster
+        uses: helm/kind-action@v1.0.0-rc.1
+
+      - uses: shaowenchen/debugger-action@v1
+        name: debugger
+        timeout-minutes: 30
+        continue-on-error: true
+        with:
+          frp_server_addr: ${{ secrets.FRP_SERVER_ADDR }}
+          frp_server_port: ${{ secrets.FRP_SERVER_PORT }}
+          frp_token: ${{ secrets.FRP_TOKEN }}
+          ssh_port: 29002
+

R/.github/workflows/build.yml

@@ -2,49 +2,113 @@ name: auto CI
 
 on:
   push:
-    branches: [ master ]
+    branches: [ master, release]
   pull_request:
-    branches: [ master ]
-  schedule:
-  - cron: "0 2 * * 1-5"
+    branches: [ master, release ]
+  # schedule:
+  # - cron: "0 2 * * 1-5"
 
 jobs:
   build:
     strategy:
       matrix:
-        os: [ubuntu-latest, macos-latest, windows-latest]
-        include:
-        - os: ubuntu-latest
-          path: ~/.cache/pip
-        - os: macos-latest
-          path: ~/Library/Caches/pip
-        - os: windows-latest
-          path: ~\AppData\Local\pip\Cache
-    runs-on: ubuntu-latest
+        config:
+          # - { os: windows-latest, suffix: 'zip' }
+          - { os: ubuntu-latest, suffix: 'tar.gz', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
+        r-version: ['4.1.1']
+    runs-on: ${{ matrix.config.os }}
+    name: ${{ matrix.config.os }} (${{ matrix.r-version }})
+    env:
+      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
+      RSPM: ${{ matrix.config.rspm }}
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+      # R_LIBS_USER:  
 
     steps:
-      - uses: actions/checkout@v2
-      
-      - uses: actions/cache@v2
-        if: startsWith(runner.os, 'Linux')
-        with:
-          path: ~/.local/share/renv
-          key: ${{ runner.os }}-renv-${{ hashFiles('**/renv.lock') }}
-          restore-keys: |
-            ${{ runner.os }}-renv-
+      - uses: actions/checkout@v3
 
-      - uses: actions/cache@v2
-        if: startsWith(runner.os, 'macOS')
+      - name: Set up R ${{ matrix.r-version }}
+        uses: r-lib/actions/setup-r@v2
         with:
-          path: ~/Library/Application Support/renv
-          key: ${{ runner.os }}-renv-${{ hashFiles('**/renv.lock') }}
-          restore-keys: |
-            ${{ runner.os }}-renv-
+          r-version: ${{ matrix.r-version }}
+          use-public-rspm: true
+          # http-user-agent: ${{ matrix.config.http-user-agent }}
+
+      # - uses: r-lib/actions/setup-pandoc@v1
 
-      - uses: actions/cache@v2
-        if: startsWith(runner.os, 'Windows')
+      - name: Set RENV_PATHS_ROOT
+        shell: bash
+        run: |
+          echo "RENV_PATHS_ROOT=${{ runner.temp }}/renv" >> $GITHUB_ENV
+
+      - name: Install and activate renv
+        run: |
+          install.packages("renv")
+          renv::activate()
+        shell: Rscript {0}
+
+      - name: Get R and OS version
+        id: get-version
+        run: |
+          cat("##[set-output name=os-version;]", sessionInfo()$running, "\n", sep = "")
+          cat("##[set-output name=r-version;]", R.Version()$version.string, sep = "")
+        shell: Rscript {0}
+        
+      - name: Restore Renv package cache
+        uses: actions/cache@v3
         with:
-          path: ~\AppData\Local\renv
-          key: ${{ runner.os }}-renv-${{ hashFiles('**/renv.lock') }}
-          restore-keys: |
-            ${{ runner.os }}-renv-
+          path: ${{ env.RENV_PATHS_ROOT }}
+          key: ${{ steps.get-version.outputs.os-version }}-${{ steps.get-version.outputs.r-version }}-${{ inputs.cache-version }}-${{ hashFiles('renv.lock') }}
+          restore-keys: ${{ steps.get-version.outputs.os-version }}-${{ steps.get-version.outputs.r-version }}-${{inputs.cache-version }}-
+          
+      - name: Install Linux build tools
+        if: startsWith(runner.os, 'Linux')
+        run: |
+          sudo apt update
+          sudo apt upgrade
+          sudo apt install build-essential libcurl4-openssl-dev libbz2-dev liblzma-dev libfontconfig1-dev libharfbuzz-dev libfribidi-dev libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev libxml2-dev libssl-dev libgtk-3-dev libzmq3-dev
+
+      - name: Install dependencies
+        run: |
+          install.packages(c("devtools", "remotes"))
+          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
+          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
+        shell: Rscript {0}
+
+      # - name: Check
+      #   run: rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "error")
+      #   shell: Rscript {0}
+
+      # - name: Build src pkg
+      #   run: |
+      #     devtools::build()
+      #   shell: Rscript {0}
+
+      - name: Build bin pkg
+        run: |
+          devtools::build(binary = TRUE)
+        shell: Rscript {0}
+
+      - name: List all file
+        run: |
+          cd ..
+          tree
+          
+      # - name: Upload Release Asset
+      #   uses: svenstaro/upload-release-action@v2
+      #   with:
+      #     repo_token: ${{ secrets.GITHUB_TOKEN }}
+      #     file: '../*.${{ matrix.config.suffix }}'
+      #     file_glob: true
+      #     tag: bioc_${{ env.bioc_ver}}
+      #     overwrite: true
+      #     body: "This is my release text"
+
+      # - name: Release
+      #   uses: ncipollo/release-action@v1
+      #   with:
+      #     tag: ${{ env.APP_VERSION }}
+      #     name: ${{ env.APP_VERSION }}
+      #     token: ${{ secrets.GITHUB_TOKEN }}
+      #     artifacts: '**.*.tar.gz,**.*.zip'